Stochastic logistic models reproduce experimental time series of microbial communities
GitHub github://sophiedeb/logistic_models
Files
The files that were last pulled from the source.
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| Data | 3 years, 1 month ago | 168.7MiB | ||
| Experimental.ipynb | 3 years, 1 month ago | 280.9KiB |
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| Figures eLife.ipynb | 3 years, 1 month ago | 322.3KiB |
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| Fisher Mehta neutral model annotated.ipynb | 3 years, 1 month ago | 108.5KiB |
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| Influence interactions SOI and sgLV.ipynb | 3 years, 1 month ago | 2.1MiB |
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| Noise color fit comparison (linear vs spline).ipynb | 3 years, 1 month ago | 50.0KiB |
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| README | 3 years, 1 month ago | 1.1KiB |
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| Study noise no interaction.ipynb | 3 years, 1 month ago | 1.5MiB |
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| Study noise with interaction.ipynb | 3 years, 1 month ago | 1.3MiB |
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| Understand noise color.ipynb | 3 years, 1 month ago | 60.6KiB |
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| Understanding Fisher Mehta Figure 2B.ipynb | 3 years, 1 month ago | 2.0MiB |
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| Width distribution dx.ipynb | 3 years, 1 month ago | 184.7KiB |
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| brownian.py | 3 years, 1 month ago | 2.6KiB |
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| elife_settings.py | 3 years, 1 month ago | 1.1KiB |
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| generate_timeseries.py | 3 years, 1 month ago | 15.2KiB |
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| make_colormap.py | 3 years, 1 month ago | 1.8KiB |
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| neutral_covariance_test.py | 3 years, 1 month ago | 5.1KiB |
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| neutrality_analysis.py | 3 years, 1 month ago | 4.0KiB |
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| noise_analysis.py | 3 years, 1 month ago | 26.9KiB |
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| noise_color_analysis.py | 3 years, 1 month ago | 2.7KiB |
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| noise_parameters.py | 3 years, 1 month ago | 409.0B |
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| noise_properties_plotting.py | 3 years, 1 month ago | 22.8KiB |
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| results | 3 years, 1 month ago | 669.2MiB | ||
| smooth_spline.py | 3 years, 1 month ago | 4.6KiB |
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| timeseries_plotting.py | 3 years, 1 month ago | 1.0KiB |
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History
The jobs associated with this source.