Stochastic logistic models reproduce experimental time series of microbial communities
GitHub github://sophiedeb/logistic_models
Files
The files that were last pulled from the source.
| Type | Path | Last modified | Size | Actions |
|---|---|---|---|---|
| Data | 3 years, 8 months ago | 168.7MiB | ||
| Experimental.ipynb | 3 years, 8 months ago | 280.9KiB |
|
|
| Figures eLife.ipynb | 3 years, 8 months ago | 322.3KiB |
|
|
| Fisher Mehta neutral model annotated.ipynb | 3 years, 8 months ago | 108.5KiB |
|
|
| Influence interactions SOI and sgLV.ipynb | 3 years, 8 months ago | 2.1MiB |
|
|
| Noise color fit comparison (linear vs spline).ipynb | 3 years, 8 months ago | 50.0KiB |
|
|
| README | 3 years, 8 months ago | 1.1KiB |
|
|
| Study noise no interaction.ipynb | 3 years, 8 months ago | 1.5MiB |
|
|
| Study noise with interaction.ipynb | 3 years, 8 months ago | 1.3MiB |
|
|
| Understand noise color.ipynb | 3 years, 8 months ago | 60.6KiB |
|
|
| Understanding Fisher Mehta Figure 2B.ipynb | 3 years, 8 months ago | 2.0MiB |
|
|
| Width distribution dx.ipynb | 3 years, 8 months ago | 184.7KiB |
|
|
| brownian.py | 3 years, 8 months ago | 2.6KiB |
|
|
| elife_settings.py | 3 years, 8 months ago | 1.1KiB |
|
|
| generate_timeseries.py | 3 years, 8 months ago | 15.2KiB |
|
|
| make_colormap.py | 3 years, 8 months ago | 1.8KiB |
|
|
| neutral_covariance_test.py | 3 years, 8 months ago | 5.1KiB |
|
|
| neutrality_analysis.py | 3 years, 8 months ago | 4.0KiB |
|
|
| noise_analysis.py | 3 years, 8 months ago | 26.9KiB |
|
|
| noise_color_analysis.py | 3 years, 8 months ago | 2.7KiB |
|
|
| noise_parameters.py | 3 years, 8 months ago | 409.0B |
|
|
| noise_properties_plotting.py | 3 years, 8 months ago | 22.8KiB |
|
|
| results | 3 years, 8 months ago | 669.2MiB | ||
| smooth_spline.py | 3 years, 8 months ago | 4.6KiB |
|
|
| timeseries_plotting.py | 3 years, 8 months ago | 1.0KiB |
|
History
The jobs associated with this source.