FROM stencila/executa-midi:20220302.1

USER root
RUN Rscript -e 'install.packages(c("BiocManager","colormap","pheatmap","emmeans","rstatix","reticulate","Seurat","mclust"))'
RUN Rscript -e 'BiocManager::install(c("WGCNA","DESeq2","limma","preprocessCore","DeconRNASeq"))'
# DeconRNASeq required for ADAPTS
RUN Rscript -e 'install.packages("ADAPTS")'
USER guest