@article{bib1, author = {Allentoft, ME and Sikora, M and Sj{\" o}gren, K-G and Rasmussen, S and Rasmussen, M and Stenderup, J and Damgaard, PB and Schroeder, H and Ahlstr{\" o}m, T and Vinner, L and Malaspinas, A-S and Margaryan, A and Higham, T and Chivall, D and Lynnerup, N and Harvig, L and Baron, J and Della Casa, P and D{\k a}browski, P and Duffy, PR and Ebel, AV and Epimakhov, A and Frei, K and Furmanek, M and Gralak, T and Gromov, A and Gronkiewicz, S and Grupe, G and Hajdu, T and Jarysz, R and Khartanovich, V and Khokhlov, A and Kiss, V and Kol{\' a}{\v r}, J and Kriiska, A and Lasak, I and Longhi, C and McGlynn, G and Merkevicius, A and Merkyte, I and Metspalu, M and Mkrtchyan, R and Moiseyev, V and Paja, L and P{\' a}lfi, G and Pokutta, D and Pospieszny, \L{} and Price, TD and Saag, L and Sablin, M and Shishlina, N and Smr{\v c}ka, V and Soenov, VI and Szever{\' e}nyi, V and T{\' o}th, G and Trifanova, SV and Varul, L and Vicze, M and Yepiskoposyan, L and Zhitenev, V and Orlando, L and Sicheritz-Pont{\' e}n, T and Brunak, S and Nielsen, R and Kristiansen, K and Willerslev, E}, journal = {Nature}, year = {2015}, pages = {167--172}, title = {Population genomics of {Bronze} {Age} {Eurasia}}, volume = {522}, } @article{bib2, author = {Anthony, DW}, year = {2007}, publisher = {Princeton University Press}, title = {The {Horse}, the {Wheel}, and {Language}}, } @article{bib3, author = {Auton, A and Abecasis, GR and Altshuler, DM and Durbin, RM and Abecasis, GR and Bentley, DR and Chakravarti, A and Clark, AG and Donnelly, P and Eichler, EE and Flicek, P and Gabriel, SB and Gibbs, RA and Green, ED and Hurles, ME and Knoppers, BM and Korbel, JO and Lander, ES and Lee, C and Lehrach, H and Mardis, ER and Marth, GT and McVean, GA and Nickerson, DA and Schmidt, JP and Sherry, ST and Wang, J and Wilson, RK and Gibbs, RA and Boerwinkle, E and Doddapaneni, H and Han, Y and Korchina, V and Kovar, C and Lee, S and Muzny, D and Reid, JG and Zhu, Y and Wang, J and Chang, Y and Feng, Q and Fang, X and Guo, X and Jian, M and Jiang, H and Jin, X and Lan, T and Li, G and Li, J and Li, Y and Liu, S and Liu, X and Lu, Y and Ma, X and Tang, M and Wang, B and Wang, G and Wu, H and Wu, R and Xu, X and Yin, Y and Zhang, D and Zhang, W and Zhao, J and Zhao, M and Zheng, X and Lander, ES and Altshuler, DM and Gabriel, SB and Gupta, N and Gharani, N and Toji, LH and Gerry, NP and Resch, AM and Flicek, P and Barker, J and Clarke, L and Gil, L and Hunt, SE and Kelman, G and Kulesha, E and Leinonen, R and McLaren, WM and Radhakrishnan, R and Roa, A and Smirnov, D and Smith, RE and Streeter, I and Thormann, A and Toneva, I and Vaughan, B and Zheng-Bradley, X and Bentley, DR and Grocock, R and Humphray, S and James, T and Kingsbury, Z and Lehrach, H and Sudbrak, R and Albrecht, MW and Amstislavskiy, VS and Borodina, TA and Lienhard, M and Mertes, F and Sultan, M and Timmermann, B and Yaspo, ML and Mardis, ER and Wilson, RK and Fulton, L and Fulton, R and Sherry, ST and Ananiev, V and Belaia, Z and Beloslyudtsev, D and Bouk, N and Chen, C and Church, D and Cohen, R and Cook, C and Garner, J and Hefferon, T and Kimelman, M and Liu, C and Lopez, J and Meric, P and O\textquoteright{}Sullivan, C and Ostapchuk, Y and Phan, L and Ponomarov, S and Schneider, V and Shekhtman, E and Sirotkin, K and Slotta, D and Zhang, H and McVean, GA and Durbin, RM and Balasubramaniam, S and Burton, J and Danecek, P and Keane, TM and Kolb-Kokocinski, A and McCarthy, S and Stalker, J and Quail, M and Schmidt, JP and Davies, CJ and Gollub, J and Webster, T and Wong, B and Zhan, Y and Auton, A and Campbell, CL and Kong, Y and Marcketta, A and Gibbs, RA and Yu, F and Antunes, L and Bainbridge, M and Muzny, D and Sabo, A and Huang, Z and Wang, J and Coin, LJM and Fang, L and Guo, X and Jin, X and Li, G and Li, Q and Li, Y and Li, Z and Lin, H and Liu, B and Luo, R and Shao, H and Xie, Y and Ye, C and Yu, C and Zhang, F and Zheng, H and Zhu, H and Alkan, C and Dal, E and Kahveci, F and Marth, GT and Garrison, EP and Kural, D and Lee, WP and Fung Leong, W and Stromberg, M and Ward, AN and Wu, J and Zhang, M and Daly, MJ and DePristo, MA and Handsaker, RE and Altshuler, DM and Banks, E and Bhatia, G and Angel, G and Gabriel, SB and Genovese, G and Gupta, N and Li, H and Kashin, S and Lander, ES and McCarroll, SA and Nemesh, JC and Poplin, RE and Yoon, SC and Lihm, J and Makarov, V and Clark, AG and Gottipati, S and Keinan, A and Rodriguez-Flores, JL and Korbel, JO and Rausch, T and Fritz, MH and St{\" u}tz, AM and Flicek, P and Beal, K and Clarke, L and Datta, A and Herrero, J and McLaren, WM and Ritchie, GRS and Smith, RE and Zerbino, D and Zheng-Bradley, X and Sabeti, PC and Shlyakhter, I and Schaffner, SF and Vitti, J and Cooper, DN and Ball, EV and Stenson, PD and Bentley, DR and Barnes, B and Bauer, M and Keira Cheetham, R and Cox, A and Eberle, M and Humphray, S and Kahn, S and Murray, L and Peden, J and Shaw, R and Kenny, EE and Batzer, MA and Konkel, MK and Walker, JA and MacArthur, DG and Lek, M and Sudbrak, R and Amstislavskiy, VS and Herwig, R and Mardis, ER and Ding, L and Koboldt, DC and Larson, D and Ye, K and Gravel, S}, journal = {Nature}, year = {2015}, pages = {68--74}, title = {The 1000 {Genomes} {Project} {Consortium}, {Corresponding} authors, {Steering} committee}, volume = {526}, } @article{bib4, author = {Baird, D and Fairbairn, A and Jenkins, E and Martin, L and Middleton, C and Pearson, J and Asouti, E and Edwards, Y and Kabukcu, C and Mustafao{\u g}lu, G and Russell, N and Bar-Yosef, O and Jacobsen, G and Wu, X and Baker, A and Elliott, S}, journal = {PNAS}, year = {2018}, title = {Agricultural origins on the {Anatolian} plateau}, volume = {115}, } @article{bib5, author = {Behar, DM and Yunusbayev, B and Metspalu, M and Metspalu, E and Rosset, S and Parik, J and Rootsi, S and Chaubey, G and Kutuev, I and Yudkovsky, G and Khusnutdinova, EK and Balanovsky, O and Semino, O and Pereira, L and Comas, D and Gurwitz, D and Bonne-Tamir, B and Parfitt, T and Hammer, MF and Skorecki, K and Villems, R}, journal = {Nature}, year = {2010}, pages = {238--242}, title = {The genome-wide structure of the {Jewish} people}, volume = {466}, } @article{bib6, author = {Bellwood, P}, year = {2005}, publisher = {Wiley-Blackwell}, title = {First {Farmers}: The {Origins} of {Agricultural} {Societies}}, } @article{bib7, author = {Bollongino, R and Nehlich, O and Richards, MP and Orschiedt, J and Thomas, MG and Sell, C and Fajkosov{\' a}, Z and Powell, A and Burger, J}, journal = {Science (New York, N.Y.)}, year = {2013}, pages = {479--481}, title = {2000 years of parallel societies in {Stone} {Age} {Central} {Europe}}, volume = {342}, } @article{bib8, author = {Brace, S and Diekmann, Y and Booth, TJ and van Dorp, L and Faltyskova, Z and Rohland, N and Mallick, S and Olalde, I and Ferry, M and Michel, M and Oppenheimer, J and Broomandkhoshbacht, N and Stewardson, K and Martiniano, R and Walsh, S and Kayser, M and Charlton, S and Hellenthal, G and Armit, I and Schulting, R and Craig, OE and Sheridan, A and Parker Pearson, M and Stringer, C and Reich, D and Thomas, MG and Barnes, I}, journal = {Nature Ecology & Evolution}, year = {2019}, pages = {765--771}, title = {Ancient genomes indicate population replacement in {Early} {Neolithic} {Britain}}, volume = {3}, } @article{bib9, author = {Bramanti, B and Thomas, MG and Haak, W and Unterlaender, M and Jores, P and Tambets, K and Antanaitis-Jacobs, I and Haidle, MN and Jankauskas, R and Kind, CJ and Lueth, F and Terberger, T and Hiller, J and Matsumura, S and Forster, P and Burger, J}, journal = {Science (New York, N.Y.)}, year = {2009}, pages = {137--140}, title = {Genetic discontinuity between local hunter-gatherers and central {Europe}\textquoteright{}s first farmers}, volume = {326}, } @article{bib10, author = {Busing, F and Meijer, E and Leeden, RVD}, journal = {Statistics and Computing}, year = {1999}, pages = {3--8}, title = {Delete-m {Jackknife} for {Unequal} m}, volume = {9}, } @article{bib11, author = {Chakraborty, R and Weiss, KM}, journal = {PNAS}, year = {1988}, pages = {9119--9123}, title = {Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci}, volume = {85}, } @article{bib12, author = {Chen, GK and Marjoram, P and Wall, JD}, journal = {Genome Research}, year = {2009}, pages = {136--142}, title = {Fast and flexible simulation of {DNA} sequence data}, volume = {19}, } @article{bib13, author = {Chintalapati, M and Patterson, N and Moorjani, P}, year = {2022}, title = {DATES\textunderscore{}v4010}, howpublished = {https://archive.softwareheritage.org/swh:1:dir:0cd95e97a6e3186515f8812dca928ba30829d132;origin=https://github.com/MoorjaniLab/DATES\textunderscore{}v4010;visit=swh:1:snp:bb2c8ef48a7ffe4366f654ee057c257c7780e88c;anchor=swh:1:rev:e034dc0d6fe8d41a828796f07791d50011b6bb04}, } @article{bib14, author = {Feldman, M and Fern{\' a}ndez-Dom{\' i}nguez, E and Reynolds, L and Baird, D and Pearson, J and Hershkovitz, I and May, H and Goring-Morris, N and Benz, M and Gresky, J and Bianco, RA and Fairbairn, A and Mustafao{\u g}lu, G and Stockhammer, PW and Posth, C and Haak, W and Jeong, C and Krause, J}, journal = {Nature Communications}, year = {2019}, title = {Late {Pleistocene} human genome suggests a local origin for the first farmers of central {Anatolia}}, volume = {10}, } @article{bib15, author = {Fernandes, DM and Strapagiel, D and Bor{\' o}wka, P and Marciniak, B and {\. Z}{\k a}dzi{\' n}ska, E and Sirak, K and Siska, V and Grygiel, R and Carlsson, J and Manica, A and Lorkiewicz, W and Pinhasi, R}, journal = {Scientific Reports}, year = {2018}, title = {A genomic {Neolithic} time transect of hunter-farmer admixture in central {Poland}}, volume = {8}, } @article{bib16, author = {Fernandes, DM and Mittnik, A and Olalde, I and Lazaridis, I and Cheronet, O and Rohland, N and Mallick, S and Bernardos, R and Broomandkhoshbacht, N and Carlsson, J and Culleton, BJ and Ferry, M and Gamarra, B and Lari, M and Mah, M and Michel, M and Modi, A and Novak, M and Oppenheimer, J and Sirak, KA and Stewardson, K and Mandl, K and Schattke, C and {\" O}zdo{\u g}an, KT and Lucci, M and Gasperetti, G and Candilio, F and Salis, G and Vai, S and Camar{\' o}s, E and Cal{\` o}, C and Catalano, G and Cueto, M and Forgia, V and Lozano, M and Marini, E and Micheletti, M and Miccich{\` e}, RM and Palombo, MR and Ramis, D and Schimmenti, V and Sureda, P and Teira, L and Teschler-Nicola, M and Kennett, DJ and Lalueza-Fox, C and Patterson, N and Sineo, L and Coppa, A and Caramelli, D and Pinhasi, R and Reich, D}, journal = {Nature Ecology & Evolution}, year = {2020}, pages = {334--345}, title = {The spread of steppe and {Iranian}-related ancestry in the islands of the western {Mediterranean}}, volume = {4}, } @article{bib17, address = {Leiden}, author = {Fokkens, H and Nicolis, F}, year = {2012}, publisher = {Sidestone Press}, title = {Background to {Beakers}. {Inquiries} into {Regional} {Cultural} {Backgrounds} of the {Bell} {Beaker} {Complex}}, } @article{bib18, author = {Fu, Q and Posth, C and Hajdinjak, M and Petr, M and Mallick, S and Fernandes, D and Furtw{\" a}ngler, A and Haak, W and Meyer, M and Mittnik, A and Nickel, B and Peltzer, A and Rohland, N and Slon, V and Talamo, S and Lazaridis, I and Lipson, M and Mathieson, I and Schiffels, S and Skoglund, P and Derevianko, AP and Drozdov, N and Slavinsky, V and Tsybankov, A and Cremonesi, RG and Mallegni, F and G{\' e}ly, B and Vacca, E and Morales, MRG and Straus, LG and Neugebauer-Maresch, C and Teschler-Nicola, M and Constantin, S and Moldovan, OT and Benazzi, S and Peresani, M and Coppola, D and Lari, M and Ricci, S and Ronchitelli, A and Valentin, F and Thevenet, C and Wehrberger, K and Grigorescu, D and Rougier, H and Crevecoeur, I and Flas, D and Semal, P and Mannino, MA and Cupillard, C and Bocherens, H and Conard, NJ and Harvati, K and Moiseyev, V and Drucker, DG and Svoboda, J and Richards, MP and Caramelli, D and Pinhasi, R and Kelso, J and Patterson, N and Krause, J and P{\" a}{\" a}bo, S and Reich, D}, journal = {Nature}, year = {2016}, pages = {200--205}, title = {The genetic history of {Ice} {Age} {Europe}}, volume = {534}, } @article{bib19, author = {Gravel, S}, journal = {Genetics}, year = {2012}, pages = {607--619}, title = {Population genetics models of local ancestry}, volume = {191}, } @article{bib20, author = {Gronenborn, D and Cummings, V and Jordan, P and Zvelebil, M}, journal = {In The Oxford Handbook of the Archaeology and Anthropology of Hunter-Gatherers}, year = {2014}, publisher = {Oxford University Press}, title = {The persistence of hunting and gathering: Neolithic western temperate and {Central} {Europe}}, } @article{bib21, author = {Guilaine, J and Ammerman, A and Biagi, P}, journal = {In The Widening Harvest. The Neolithic Transition in Europe: Looking Back, Looking Forward}, year = {2003}, publisher = {Archaeological Institute of America}, title = {Aspects de la n{\' e}olithisation en {M}{\' e}diterran{\' e}e et en {France}}, } @article{bib22, author = {G{\" u}nther, T and Malmstr{\" o}m, H and Svensson, EM and Omrak, A and S{\' a}nchez-Quinto, F and K\i{}l\i{}n{\c c}, GM and Krzewi{\' n}ska, M and Eriksson, G and Fraser, M and Edlund, H and Munters, AR and Coutinho, A and Sim{\~ o}es, LG and Vicente, M and Sj{\" o}lander, A and Jansen Sellevold, B and J\o{}rgensen, R and Claes, P and Shriver, MD and Valdiosera, C and Netea, MG and Apel, J and Lid{\' e}n, K and Skar, B and Stor{\r a}, J and G{\" o}therstr{\" o}m, A and Jakobsson, M}, journal = {PLOS Biology}, year = {2018}, title = {Population genomics of {Mesolithic} {Scandinavia}: Investigating early postglacial migration routes and high-latitude adaptation}, volume = {16}, } @article{bib23, author = {Haak, W and Balanovsky, O and Sanchez, JJ and Koshel, S and Zaporozhchenko, V and Adler, CJ and Der Sarkissian, CSI and Brandt, G and Schwarz, C and Nicklisch, N and Dresely, V and Fritsch, B and Balanovska, E and Villems, R and Meller, H and Alt, KW and Cooper, A and {Members of the Genographic Consortium}}, journal = {PLOS Biology}, year = {2010}, title = {Ancient {DNA} from {European} early neolithic farmers reveals their near eastern affinities}, volume = {8}, } @article{bib24, author = {Haak, W and Lazaridis, I and Patterson, N and Rohland, N and Mallick, S and Llamas, B and Brandt, G and Nordenfelt, S and Harney, E and Stewardson, K and Fu, Q and Mittnik, A and B{\' a}nffy, E and Economou, C and Francken, M and Friederich, S and Pena, RG and Hallgren, F and Khartanovich, V and Khokhlov, A and Kunst, M and Kuznetsov, P and Meller, H and Mochalov, O and Moiseyev, V and Nicklisch, N and Pichler, SL and Risch, R and Rojo Guerra, MA and Roth, C and Sz{\' e}cs{\' e}nyi-Nagy, A and Wahl, J and Meyer, M and Krause, J and Brown, D and Anthony, D and Cooper, A and Alt, KW and Reich, D}, journal = {Nature}, year = {2015}, pages = {207--211}, title = {Massive migration from the steppe was a source for {Indo}-{European} languages in {Europe}}, volume = {522}, } @article{bib25, author = {Halldorsson, BV and Palsson, G and Stefansson, OA and Jonsson, H and Hardarson, MT and Eggertsson, HP and Gunnarsson, B and Oddsson, A and Halldorsson, GH and Zink, F and Gudjonsson, SA and Frigge, ML and Thorleifsson, G and Sigurdsson, A and Stacey, SN and Sulem, P and Masson, G and Helgason, A and Gudbjartsson, DF and Thorsteinsdottir, U and Stefansson, K}, journal = {Science (New York, N.Y.)}, year = {2019}, title = {Characterizing mutagenic effects of recombination through a sequence-level genetic map}, volume = {363}, } @article{bib26, author = {Harney, {\' E} and Patterson, N and Reich, D and Wakeley, J}, journal = {Genetics}, year = {2021}, title = {Assessing the performance of {qpAdm}: a statistical tool for studying population admixture}, volume = {217}, } @article{bib27, author = {Hellenthal, G and Busby, GBJ and Band, G and Wilson, JF and Capelli, C and Falush, D and Myers, S}, journal = {Science (New York, N.Y.)}, year = {2014}, pages = {747--751}, title = {A genetic atlas of human admixture history}, volume = {343}, } @article{bib28, author = {Henn, BM and Botigu{\' e}, LR and Gravel, S and Wang, W and Brisbin, A and Byrnes, JK and Fadhlaoui-Zid, K and Zalloua, PA and Moreno-Estrada, A and Bertranpetit, J and Bustamante, CD and Comas, D}, journal = {PLOS Genetics}, year = {2012}, title = {Genomic ancestry of {North} {Africans} supports back-to-{Africa} migrations}, volume = {8}, } @article{bib29, author = {Hofmanov{\' a}, Z and Kreutzer, S and Hellenthal, G and Sell, C and Diekmann, Y and D{\' i}ez-Del-Molino, D and van Dorp, L and L{\' o}pez, S and Kousathanas, A and Link, V and Kirsanow, K and Cassidy, LM and Martiniano, R and Strobel, M and Scheu, A and Kotsakis, K and Halstead, P and Triantaphyllou, S and Kyparissi-Apostolika, N and Urem-Kotsou, D and Ziota, C and Adaktylou, F and Gopalan, S and Bobo, DM and Winkelbach, L and Bl{\" o}cher, J and Unterl{\" a}nder, M and Leuenberger, C and {\c C}ilingiro{\u g}lu, {\c C} and Horejs, B and Gerritsen, F and Shennan, SJ and Bradley, DG and Currat, M and Veeramah, KR and Wegmann, D and Thomas, MG and Papageorgopoulou, C and Burger, J}, journal = {PNAS}, year = {2016}, pages = {6886--6891}, title = {Early farmers from across {Europe} directly descended from {Neolithic} {Aegeans}}, volume = {113}, } @article{bib30, author = {Jones, ER and Gonzalez-Fortes, G and Connell, S and Siska, V and Eriksson, A and Martiniano, R and McLaughlin, RL and Gallego Llorente, M and Cassidy, LM and Gamba, C and Meshveliani, T and Bar-Yosef, O and M{\" u}ller, W and Belfer-Cohen, A and Matskevich, Z and Jakeli, N and Higham, TFG and Currat, M and Lordkipanidze, D and Hofreiter, M and Manica, A and Pinhasi, R and Bradley, DG}, journal = {Nature Communications}, year = {2015}, title = {Upper {Palaeolithic} genomes reveal deep roots of modern {Eurasians}}, volume = {6}, } @article{bib31, author = {J{\' o}nsson, H and Sulem, P and Kehr, B and Kristmundsdottir, S and Zink, F and Hjartarson, E and Hardarson, MT and Hjorleifsson, KE and Eggertsson, HP and Gudjonsson, SA and Ward, LD and Arnadottir, GA and Helgason, EA and Helgason, H and Gylfason, A and Jonasdottir, A and Jonasdottir, A and Rafnar, T and Frigge, M and Stacey, SN and Th Magnusson, O and Thorsteinsdottir, U and Masson, G and Kong, A and Halldorsson, BV and Helgason, A and Gudbjartsson, DF and Stefansson, K}, journal = {Nature}, year = {2017}, pages = {519--522}, title = {Parental influence on human germline de novo mutations in 1,548 trios from {Iceland}}, volume = {549}, } @article{bib32, author = {Kashuba, N and K\i{}rd{\" o}k, E and Damlien, H and Manninen, MA and Nordqvist, B and Persson, P and G{\" o}therstr{\" o}m, A}, journal = {Communications Biology}, year = {2019}, title = {Ancient {DNA} from mastics solidifies connection between material culture and genetics of mesolithic hunter-gatherers in {Scandinavia}}, volume = {2}, } @article{bib33, author = {Kassian, AS and Zhivlov, M and Starostin, G and Trofimov, AA and Kocharov, PA and Kuritsyna, A and Saenko, MN}, journal = {Linguistics}, year = {2021}, pages = {949--979}, title = {Rapid radiation of the inner {Indo}-{European} languages: an advanced approach to {Indo}-{European} lexicostatistics}, volume = {59}, } @article{bib34, author = {K\i{}l\i{}n{\c c}, GM and Omrak, A and {\" O}zer, F and G{\" u}nther, T and B{\" u}y{\" u}kkarakaya, AM and B\i{}{\c c}ak{\c c}\i{}, E and Baird, D and D{\" o}nerta{\c s}, HM and Ghalichi, A and Yaka, R and Koptekin, D and A{\c c}an, SC and Parvizi, P and Krzewi{\' n}ska, M and Daskalaki, EA and Y{\" u}nc{\" u}, E and Da{\u g}ta{\c s}, ND and Fairbairn, A and Pearson, J and Mustafao{\u g}lu, G and Erdal, YS and {\c C}akan, YG and Togan, {\. I} and Somel, M and Stor{\r a}, J and Jakobsson, M and G{\" o}therstr{\" o}m, A}, journal = {Current Biology}, year = {2016}, pages = {2659--2666}, title = {The {Demographic} {Development} of the {First} {Farmers} in {Anatolia}}, volume = {26}, } @article{bib35, author = {Li, JZ and Absher, DM and Tang, H and Southwick, AM and Casto, AM and Ramachandran, S and Cann, HM and Barsh, GS and Feldman, M and Cavalli-Sforza, LL and Myers, RM}, journal = {Science (New York, N.Y.)}, year = {2008}, pages = {1100--1104}, title = {Worldwide human relationships inferred from genome-wide patterns of variation}, volume = {319}, } @article{bib36, author = {Lipson, M and Sz{\' e}cs{\' e}nyi-Nagy, A and Mallick, S and P{\' o}sa, A and St{\' e}gm{\' a}r, B and Keerl, V and Rohland, N and Stewardson, K and Ferry, M and Michel, M and Oppenheimer, J and Broomandkhoshbacht, N and Harney, E and Nordenfelt, S and Llamas, B and Guszt{\' a}v Mende, B and K{\" o}hler, K and Oross, K and Bond{\' a}r, M and Marton, T and Oszt{\' a}s, A and Jakucs, J and Paluch, T and Horv{\' a}th, F and Csengeri, P and Ko{\' o}s, J and Seb{\H o}k, K and Anders, A and Raczky, P and Regenye, J and Barna, JP and F{\' a}bi{\' a}n, S and Serlegi, G and Toldi, Z and Gy{\" o}ngyv{\' e}r Nagy, E and Dani, J and Moln{\' a}r, E and P{\' a}lfi, G and M{\' a}rk, L and Melegh, B and B{\' a}nfai, Z and Dombor{\' o}czki, L and Fern{\' a}ndez-Eraso, J and Antonio Mujika-Alustiza, J and Alonso Fern{\' a}ndez, C and Jim{\' e}nez Echevarr{\' i}a, J and Bollongino, R and Orschiedt, J and Schierhold, K and Meller, H and Cooper, A and Burger, J and B{\' a}nffy, E and Alt, KW and Lalueza-Fox, C and Haak, W and Reich, D}, journal = {Nature}, year = {2017}, pages = {368--372}, title = {Parallel palaeogenomic transects reveal complex genetic history of early {European} farmers}, volume = {551}, } @article{bib37, author = {Loh, PR and Lipson, M and Patterson, N and Moorjani, P and Pickrell, JK and Reich, D and Berger, B}, journal = {Genetics}, year = {2013}, pages = {1233--1254}, title = {Inferring admixture histories of human populations using linkage disequilibrium}, volume = {193}, } @article{bib38, author = {Malmstr{\" o}m, H and G{\" u}nther, T and Svensson, EM and Juras, A and Fraser, M and Munters, AR and Pospieszny, \L{} and T{\~ o}rv, M and Lindstr{\" o}m, J and G{\" o}therstr{\" o}m, A and Stor{\r a}, J and Jakobsson, M}, journal = {Proceedings. Biological Sciences}, year = {2019}, title = {The genomic ancestry of the {Scandinavian} {Battle} {Axe} {Culture} people and their relation to the broader {Corded} {Ware} horizon}, volume = {286}, } @article{bib39, author = {Mittnik, A and Wang, CC and Pfrengle, S and Daubaras, M and Zari{\c n}a, G and Hallgren, F and Allm{\" a}e, R and Khartanovich, V and Moiseyev, V and T{\~ o}rv, M and Furtw{\" a}ngler, A and Andrades Valtue{\~ n}a, A and Feldman, M and Economou, C and Oinonen, M and Vasks, A and Balanovska, E and Reich, D and Jankauskas, R and Haak, W and Schiffels, S and Krause, J}, journal = {Nature Communications}, year = {2018}, title = {The genetic prehistory of the {Baltic} {Sea} region}, volume = {9}, } @article{bib40, author = {Moorjani, P and Patterson, N and Hirschhorn, JN and Keinan, A and Hao, L and Atzmon, G and Burns, E and Ostrer, H and Price, AL and Reich, D}, journal = {PLOS Genetics}, year = {2011}, title = {The history of {African} gene flow into {Southern} {Europeans}, {Levantines}, and {Jews}}, volume = {7}, } @article{bib41, author = {Moorjani, P and Sankararaman, S and Fu, Q and Przeworski, M and Patterson, N and Reich, D}, journal = {PNAS}, year = {2016}, pages = {5652--5657}, title = {A genetic method for dating ancient genomes provides {A} direct estimate of human generation interval in the last 45,000 years}, volume = {113}, } @article{bib42, author = {Morgunova, NL and Khokhlova, OS}, journal = {Radiocarbon}, year = {2016}, pages = {1286--1296}, title = {Chronology and {Periodization} of the {Pit}-{Grave} {Culture} in the {Region} {Between} the {Volga} and {Ural} {Rivers} {Based} on {Radiocarbon} {Dating} and {Paleopedological} {Research}}, volume = {55}, } @article{bib43, author = {Narasimhan, VM and Patterson, N and Moorjani, P and Rohland, N and Bernardos, R and Mallick, S and Lazaridis, I and Nakatsuka, N and Olalde, I and Lipson, M and Kim, AM and Olivieri, LM and Coppa, A and Vidale, M and Mallory, J and Moiseyev, V and Kitov, E and Monge, J and Adamski, N and Alex, N and Broomandkhoshbacht, N and Candilio, F and Callan, K and Cheronet, O and Culleton, BJ and Ferry, M and Fernandes, D and Freilich, S and Gamarra, B and Gaudio, D and Hajdinjak, M and Harney, {\' E} and Harper, TK and Keating, D and Lawson, AM and Mah, M and Mandl, K and Michel, M and Novak, M and Oppenheimer, J and Rai, N and Sirak, K and Slon, V and Stewardson, K and Zalzala, F and Zhang, Z and Akhatov, G and Bagashev, AN and Bagnera, A and Baitanayev, B and Bendezu-Sarmiento, J and Bissembaev, AA and Bonora, GL and Chargynov, TT and Chikisheva, T and Dashkovskiy, PK and Derevianko, A and Dobe{\v s}, M and Douka, K and Dubova, N and Duisengali, MN and Enshin, D and Epimakhov, A and Fribus, AV and Fuller, D and Goryachev, A and Gromov, A and Grushin, SP and Hanks, B and Judd, M and Kazizov, E and Khokhlov, A and Krygin, AP and Kupriyanova, E and Kuznetsov, P and Luiselli, D and Maksudov, F and Mamedov, AM and Mamirov, TB and Meiklejohn, C and Merrett, DC and Micheli, R and Mochalov, O and Mustafokulov, S and Nayak, A and Pettener, D and Potts, R and Razhev, D and Rykun, M and Sarno, S and Savenkova, TM and Sikhymbaeva, K and Slepchenko, SM and Soltobaev, OA and Stepanova, N and Svyatko, S and Tabaldiev, K and Teschler-Nicola, M and Tishkin, AA and Tkachev, VV and Vasilyev, S and Velem{\' i}nsk{\' y}, P and Voyakin, D and Yermolayeva, A and Zahir, M and Zubkov, VS and Zubova, A and Shinde, VS and Lalueza-Fox, C and Meyer, M and Anthony, D and Boivin, N and Thangaraj, K and Kennett, DJ and Frachetti, M and Pinhasi, R and Reich, D}, journal = {Science (New York, N.Y.)}, year = {2019}, title = {The formation of human populations in {South} and {Central} {Asia}}, volume = {365}, } @article{bib44, author = {Olalde, I and Brace, S and Allentoft, ME and Armit, I and Kristiansen, K and Booth, T and Rohland, N and Mallick, S and Sz{\' e}cs{\' e}nyi-Nagy, A and Mittnik, A and Altena, E and Lipson, M and Lazaridis, I and Harper, TK and Patterson, N and Broomandkhoshbacht, N and Diekmann, Y and Faltyskova, Z and Fernandes, D and Ferry, M and Harney, E and de Knijff, P and Michel, M and Oppenheimer, J and Stewardson, K and Barclay, A and Alt, KW and Liesau, C and R{\' i}os, P and Blasco, C and Miguel, JV and Garc{\' i}a, RM and Fern{\' a}ndez, AA and B{\' a}nffy, E and Bernab{\` o}-Brea, M and Billoin, D and Bonsall, C and Bonsall, L and Allen, T and B{\" u}ster, L and Carver, S and Navarro, LC and Craig, OE and Cook, GT and Cunliffe, B and Denaire, A and Dinwiddy, KE and Dodwell, N and Ern{\' e}e, M and Evans, C and Kucha{\v r}{\' i}k, M and Farr{\' e}, JF and Fowler, C and Gazenbeek, M and Pena, RG and Haber-Uriarte, M and Haduch, E and Hey, G and Jowett, N and Knowles, T and Massy, K and Pfrengle, S and Lefranc, P and Lemercier, O and Lefebvre, A and Mart{\' i}nez, CH and Olmo, VG and Ram{\' i}rez, AB and Maurandi, JL and Maj{\' o}, T and McKinley, JI and McSweeney, K and Mende, BG and Modi, A and Kulcs{\' a}r, G and Kiss, V and Czene, A and Patay, R and Endr{\H o}di, A and K{\" o}hler, K and Hajdu, T and Szeniczey, T and Dani, J and Bernert, Z and Hoole, M and Cheronet, O and Keating, D and Velem{\' i}nsk{\' y}, P and Dobe{\v s}, M and Candilio, F and Brown, F and Fern{\' a}ndez, RF and Herrero-Corral, A-M and Tusa, S and Carnieri, E and Lentini, L and Valenti, A and Zanini, A and Waddington, C and Delibes, G and Guerra-Doce, E and Neil, B and Brittain, M and Luke, M and Mortimer, R and Desideri, J and Besse, M and Br{\" u}cken, G and Furmanek, M and Ha\l{}uszko, A and Mackiewicz, M and Rapi{\' n}ski, A and Leach, S and Soriano, I and Lillios, KT and Cardoso, JL and Pearson, MP and W\l{}odarczak, P and Price, TD and Prieto, P and Rey, P-J and Risch, R and Rojo Guerra, MA and Schmitt, A and Serralongue, J and Silva, AM and Smr{\v c}ka, V and Vergnaud, L and Zilh{\~ a}o, J and Caramelli, D and Higham, T and Thomas, MG and Kennett, DJ and Fokkens, H and Heyd, V and Sheridan, A and Sj{\" o}gren, K-G and Stockhammer, PW and Krause, J and Pinhasi, R and Haak, W and Barnes, I and Lalueza-Fox, C and Reich, D}, journal = {Nature}, year = {2018}, pages = {190--196}, title = {The {Beaker} phenomenon and the genomic transformation of northwest {Europe}}, volume = {555}, } @article{bib45, author = {Olalde, I and Mallick, S and Patterson, N and Rohland, N and Villalba-Mouco, V and Silva, M and Dulias, K and Edwards, CJ and Gandini, F and Pala, M and Soares, P and Ferrando-Bernal, M and Adamski, N and Broomandkhoshbacht, N and Cheronet, O and Culleton, BJ and Fernandes, D and Lawson, AM and Mah, M and Oppenheimer, J and Stewardson, K and Zhang, Z and Jim{\' e}nez Arenas, JM and Toro Moyano, IJ and Salazar-Garc{\' i}a, DC and Castanyer, P and Santos, M and Tremoleda, J and Lozano, M and Garc{\' i}a Borja, P and Fern{\' a}ndez-Eraso, J and Mujika-Alustiza, JA and Barroso, C and Berm{\' u}dez, FJ and Viguera M{\' i}nguez, E and Burch, J and Coromina, N and Viv{\' o}, D and Cebri{\` a}, A and Fullola, JM and Garc{\' i}a-Puchol, O and Morales, JI and Oms, FX and Maj{\' o}, T and Verg{\` e}s, JM and D{\' i}az-Carvajal, A and Ollich-Castanyer, I and L{\' o}pez-Cachero, FJ and Silva, AM and Alonso-Fern{\' a}ndez, C and Delibes de Castro, G and Jim{\' e}nez Echevarr{\' i}a, J and Moreno-M{\' a}rquez, A and Pascual Berlanga, G and Ramos-Garc{\' i}a, P and Ramos-Mu{\~ n}oz, J and Vijande Vila, E and Aguilella Arzo, G and Esparza Arroyo, {\' A} and Lillios, KT and Mack, J and Velasco-V{\' a}zquez, J and Waterman, A and Ben{\' i}tez de Lugo Enrich, L and Benito S{\' a}nchez, M and Agust{\' i}, B and Codina, F and de Prado, G and Estalrrich, A and Fern{\' a}ndez Flores, {\' A} and Finlayson, C and Finlayson, G and Finlayson, S and Giles-Guzm{\' a}n, F and Rosas, A and Barciela Gonz{\' a}lez, V and Garc{\' i}a Ati{\' e}nzar, G and Hern{\' a}ndez P{\' e}rez, MS and Llanos, A and Carri{\' o}n Marco, Y and Collado Beneyto, I and L{\' o}pez-Serrano, D and Sanz Tormo, M and Valera, AC and Blasco, C and Liesau, C and R{\' i}os, P and Daura, J and de Pedro Mich{\' o}, MJ and Diez-Castillo, AA and Flores Fern{\' a}ndez, R and Franc{\` e}s Farr{\' e}, J and Garrido-Pena, R and Gon{\c c}alves, VS and Guerra-Doce, E and Herrero-Corral, AM and Juan-Cabanilles, J and L{\' o}pez-Reyes, D and McClure, SB and Merino P{\' e}rez, M and Oliver Foix, A and Sanz Borr{\` a}s, M and Sousa, AC and Vidal Encinas, JM and Kennett, DJ and Richards, MB and Werner Alt, K and Haak, W and Pinhasi, R and Lalueza-Fox, C and Reich, D}, journal = {Science (New York, N.Y.)}, year = {2019}, pages = {1230--1234}, title = {The genomic history of the {Iberian} {Peninsula} over the past 8000 years}, volume = {363}, } @article{bib46, author = {Orlando, L and Allaby, R and Skoglund, P and Der Sarkissian, C and Stockhammer, PW and {\' A}vila-Arcos, MC and Fu, Q and Krause, J and Willerslev, E and Stone, AC and Warinner, C}, journal = {Nature Reviews Methods Primers}, year = {2021}, title = {Ancient {DNA} analysis}, volume = {1}, } @article{bib47, author = {Osborne, MR and Smyth, GK}, journal = {Journal of Applied Probability}, year = {2016}, pages = {419--430}, title = {An algorithm for exponential fitting revisited}, volume = {23}, } @article{bib48, author = {Pagani, L and Colonna, V and Tyler-Smith, C and Ayub, Q}, journal = {Man in India}, year = {2017}, pages = {267--278}, title = {An {Ethnolinguistic} and {Genetic} {Perspective} on the {Origins} of the {Dravidian}-{Speaking} {Brahui} in {Pakistan}}, volume = {97}, } @article{bib49, author = {Patterson, N and Moorjani, P and Luo, Y and Mallick, S and Rohland, N and Zhan, Y and Genschoreck, T and Webster, T and Reich, D}, journal = {Genetics}, year = {2012}, pages = {1065--1093}, title = {Ancient admixture in human history}, volume = {192}, } @article{bib50, author = {Pickrell, JK and Reich, D}, journal = {Trends in Genetics}, year = {2014}, pages = {377--389}, title = {Toward a new history and geography of human genes informed by ancient {DNA}}, volume = {30}, } @article{bib51, author = {Price, AL and Tandon, A and Patterson, N and Barnes, KC and Rafaels, N and Ruczinski, I and Beaty, TH and Mathias, R and Reich, D and Myers, S}, journal = {PLOS Genetics}, year = {2009}, title = {Sensitive detection of chromosomal segments of distinct ancestry in admixed populations}, volume = {5}, } @article{bib52, author = {Rivollat, M and Jeong, C and Schiffels, S and K{\" u}{\c c}{\" u}kkal\i{}p{\c c}\i{}, {\. I} and Pemonge, M-H and Rohrlach, AB and Alt, KW and Binder, D and Friederich, S and Ghesqui{\` e}re, E and Gronenborn, D and Laporte, L and Lefranc, P and Meller, H and R{\' e}veillas, H and Rosenstock, E and Rottier, S and Scarre, C and Soler, L and Wahl, J and Krause, J and Deguilloux, M-F and Haak, W}, journal = {Science Advances}, year = {2020}, title = {Ancient genome-wide {DNA} from {France} highlights the complexity of interactions between {Mesolithic} hunter-gatherers and {Neolithic} farmers}, volume = {6}, } @article{bib53, author = {Skoglund, P and Malmstr{\" o}m, H and Raghavan, M and Stor{\r a}, J and Hall, P and Willerslev, E and Gilbert, MTP and G{\" o}therstr{\" o}m, A and Jakobsson, M}, journal = {Science (New York, N.Y.)}, year = {2012}, pages = {466--469}, title = {Origins and genetic legacy of {Neolithic} farmers and hunter-gatherers in {Europe}}, volume = {336}, } @article{bib54, author = {Skoglund, P and Malmstr{\" o}m, H and Omrak, A and Raghavan, M and Valdiosera, C and G{\" u}nther, T and Hall, P and Tambets, K and Parik, J and Sj{\" o}gren, K-G and Apel, J and Willerslev, E and Stor{\r a}, J and G{\" o}therstr{\" o}m, A and Jakobsson, M}, journal = {Science (New York, N.Y.)}, year = {2014}, pages = {747--750}, title = {Genomic diversity and admixture differs for {Stone}-{Age} {Scandinavian} foragers and farmers}, volume = {344}, } @article{bib55, author = {Tournebize, R and Chu, G and Moorjani, P}, journal = {Evolutionary Biology}, year = {2020}, title = {Reconstructing the {History} of {Founder} {Events} {Using} {Genome}-{Wide} {Patterns} of {Allele} {Sharing} across {Individuals}}, volume = {1}, } @article{bib56, author = {Wang, C-C and Reinhold, S and Kalmykov, A and Wissgott, A and Brandt, G and Jeong, C and Cheronet, O and Ferry, M and Harney, E and Keating, D and Mallick, S and Rohland, N and Stewardson, K and Kantorovich, AR and Maslov, VE and Petrenko, VG and Erlikh, VR and Atabiev, BC and Magomedov, RG and Kohl, PL and Alt, KW and Pichler, SL and Gerling, C and Meller, H and Vardanyan, B and Yeganyan, L and Rezepkin, AD and Mariaschk, D and Berezina, N and Gresky, J and Fuchs, K and Knipper, C and Schiffels, S and Balanovska, E and Balanovsky, O and Mathieson, I and Higham, T and Berezin, YB and Buzhilova, A and Trifonov, V and Pinhasi, R and Belinskij, AB and Reich, D and Hansen, S and Krause, J and Haak, W}, journal = {Nature Communications}, year = {2019}, title = {Ancient human genome-wide data from a 3000-year interval in the {Caucasus} corresponds with eco-geographic regions}, volume = {10}, } @article{bib57, author = {Willigen, MJ and van, S}, journal = {Bell Beakers Today}, year = {2001}, title = {New radiocarbon evidence for european {Bell} {Beakers} and the consequences for the diffusion of the {Bell} {Beaker} {Phenomenon}}, volume = {1}, }