@article{bib1,
	author = {Altman, DG and Royston, P},
	journal = {BMJ},
	year = {2006},
	title = {The cost of dichotomising continuous variables},
	volume = {332},
}

@article{bib2,
	author = {Biggs, R and Macmillan, RL},
	journal = {Journal of Clinical Pathology},
	year = {1948},
	pages = {288--291},
	title = {The error of the red cell count},
	volume = {1},
}

@article{bib3,
	author = {Blum, D and Hao, H and McCarthy, M and {Reproducibility Project: Cancer Biology}},
	journal = {eLife},
	year = {2015},
	title = {Registered report: Transcriptional amplification in tumor cells with elevated c-{Myc}},
	volume = {4},
}

@article{bib4,
	author = {Cohen, J},
	journal = {Applied Psychological Measurement},
	year = {1983},
	pages = {249--253},
	title = {The cost of dichotomization},
	volume = {7},
}

@article{bib5,
	author = {Duffy, DJ and Krstic, A and Halasz, M and Schwarzl, T and Fey, D and Iljin, K and Mehta, JP and Killick, K and Whilde, J and Turriziani, B and Haapa-Paananen, S and Fey, V and Fischer, M and Westermann, F and Henrich, K-O and Bannert, S and Higgins, DG and Kolch, W},
	journal = {Oncotarget},
	year = {2015},
	pages = {43182--43201},
	title = {Integrative omics reveals {MYCN} as a global suppressor of cellular signalling and enables network-based therapeutic target discovery in neuroblastoma},
	volume = {6},
}

@article{bib6,
	author = {Errington, TM and Iorns, E and Gunn, W and Tan, FE and Lomax, J and Nosek, BA},
	journal = {eLife},
	year = {2014},
	title = {An open investigation of the reproducibility of cancer biology research},
	volume = {3},
}

@article{bib7,
	author = {Fagnocchi, L and Cherubini, A and Hatsuda, H and Fasciani, A and Mazzoleni, S and Poli, V and Berno, V and Rossi, RL and Reinbold, R and Endele, M and Schroeder, T and Rocchigiani, M and Szkar\l{}at, {\. Z} and Oliviero, S and Dalton, S and Zippo, A},
	journal = {Nature Communications},
	year = {2016},
	title = {A {Myc}-driven self-reinforcing regulatory network maintains mouse embryonic stem cell identity},
	volume = {7},
}

@article{bib8,
	author = {Gelman, A and Stern, H},
	journal = {The American Statistician},
	year = {2006},
	pages = {328--331},
	title = {The difference between ``significant'' and ``not significant'' is not itself statistically significant},
	volume = {60},
}

@article{bib9,
	author = {Hart, JR and Roberts, TC and Weinberg, MS and Morris, KV and Vogt, PK},
	journal = {Oncotarget},
	year = {2014},
	pages = {12543--12554},
	title = {MYC regulates the non-coding transcriptome},
	volume = {5},
}

@article{bib10,
	author = {Hartgerink, CHJ},
	year = {2017},
	title = {Composing reproducible manuscripts using {R} {Markdown}},
	howpublished = {https://elifesciences.org/labs/cad57bcf/composing-reproducible-manuscripts-using-r-markdown},
}

@article{bib11,
	author = {Hiorns, LR and Bradshaw, TD and Skelton, LA and Yu, Q and Kelland, LR and Leyland-Jones, B},
	journal = {British Journal of Cancer},
	year = {2004},
	pages = {476--482},
	title = {Variation in {RNA} expression and genomic {DNA} content acquired during cell culture},
	volume = {90},
}

@article{bib12,
	author = {Hsu, TY and Simon, LM and Neill, NJ and Marcotte, R and Sayad, A and Bland, CS and Echeverria, GV and Sun, T and Kurley, SJ and Tyagi, S and Karlin, KL and Dominguez-Vida{\~ n}a, R and Hartman, JD and Renwick, A and Scorsone, K and Bernardi, RJ and Skinner, SO and Jain, A and Orellana, M and Lagisetti, C and Golding, I and Jung, SY and Neilson, JR and Zhang, XH and Cooper, TA and Webb, TR and Neel, BG and Shaw, CA and Westbrook, TF},
	journal = {Nature},
	year = {2015},
	pages = {384--388},
	title = {The spliceosome is a therapeutic vulnerability in {MYC}-driven cancer},
	volume = {525},
}

@article{bib13,
	author = {Hughes, P and Marshall, D and Reid, Y and Parkes, H and Gelber, C},
	journal = {over-passaged cell lines: how much more data do we need? BioTechniques},
	year = {2007},
	pages = {575--586},
	title = {The costs of using unauthenticated},
	volume = {43},
}

@article{bib14,
	author = {Kleensang, A and Vantangoli, MM and Odwin-DaCosta, S and Andersen, ME and Boekelheide, K and Bouhifd, M and Fornace, AJ and Li, HH and Livi, CB and Madnick, S and Maertens, A and Rosenberg, M and Yager, JD and Zhaog, L and Hartung, T},
	journal = {Scientific Reports},
	year = {2016},
	title = {Genetic variability in a frozen batch of {MCF}-7 cells invisible in routine authentication affecting cell function},
	volume = {6},
}

@article{bib15,
	author = {Leek, JT and Scharpf, RB and Bravo, HC and Simcha, D and Langmead, B and Johnson, WE and Geman, D and Baggerly, K and Irizarry, RA},
	journal = {Nature Reviews Genetics},
	year = {2010},
	pages = {733--739},
	title = {Tackling the widespread and critical impact of batch effects in high-throughput data},
	volume = {11},
}

@article{bib16,
	author = {Lewis, LM and Edwards, MC and Meyers, ZR and Talbot, CC and Hao, H and Blum, D and Iorns, E and Tsui, R and Denis, A and Perfito, N and Errington, TM},
	journal = {Open Science Framework},
	year = {2017},
	title = {Study 48: Replication of {Lin} et al., 2012 ({Cell})},
}

@article{bib17,
	author = {Lin, CY and Lov{\' e}n, J and Rahl, PB and Paranal, RM and Burge, CB and Bradner, JE and Lee, TI and Young, RA},
	journal = {Cell},
	year = {2012},
	pages = {56--67},
	title = {Transcriptional amplification in tumor cells with elevated c-{Myc}},
	volume = {151},
}

@article{bib18,
	author = {Lorenzin, F and Benary, U and Baluapuri, A and Walz, S and Jung, LA and von Eyss, B and Kisker, C and Wolf, J and Eilers, M and Wolf, E},
	journal = {eLife},
	year = {2016},
	title = {Different promoter affinities account for specificity in {MYC}-dependent gene regulation},
	volume = {5},
}

@article{bib19,
	author = {Nie, Z and Hu, G and Wei, G and Cui, K and Yamane, A and Resch, W and Wang, R and Green, DR and Tessarollo, L and Casellas, R and Zhao, K and Levens, D},
	journal = {Cell},
	year = {2012},
	pages = {68--79},
	title = {c-{Myc} is a universal amplifier of expressed genes in lymphocytes and embryonic stem cells},
	volume = {151},
}

@article{bib20,
	author = {Nielson, L and Smyth, G and Greenfield, P},
	journal = {Biotechnology Progress},
	year = {1991},
	pages = {560--563},
	title = {Hemacytometer {Cell} {Count} {Distributions}: Implications of {Non}-{Poisson} {Behavior}},
	volume = {7},
}

@article{bib21,
	author = {Nieuwenhuis, S and Forstmann, BU and Wagenmakers, EJ},
	journal = {Nature Neuroscience},
	year = {2011},
	pages = {1105--1107},
	title = {Erroneous analyses of interactions in neuroscience: a problem of significance},
	volume = {14},
}

@article{bib22,
	author = {Padovan-Merhar, O and Nair, GP and Biaesch, AG and Mayer, A and Scarfone, S and Foley, SW and Wu, AR and Churchman, LS and Singh, A and Raj, A},
	journal = {Molecular Cell},
	year = {2015},
	pages = {339--352},
	title = {Single mammalian cells compensate for differences in cellular volume and {DNA} copy number through independent global transcriptional mechanisms},
	volume = {58},
}

@article{bib23,
	author = {Pajic, A and Spitkovsky, D and Christoph, B and Kempkes, B and Schuhmacher, M and Staege, MS and Brielmeier, M and Ellwart, J and Kohlhuber, F and Bornkamm, GW and Polack, A and Eick, D},
	journal = {International Journal of Cancer},
	year = {2000},
	pages = {787--793},
	title = {Cell cycle activation by c-myc in a burkitt lymphoma model cell line},
	volume = {87},
}

@article{bib24,
	author = {Pratt, JW},
	journal = {Journal of the American Statistical Association},
	year = {1959},
	pages = {655--667},
	title = {Remarks on zeros and ties in the wilcoxon signed rank procedures},
	volume = {54},
}

@article{bib25,
	author = {{R Core Team}},
	year = {2017},
	title = {R: A language and environment for statistical computing},
}

@article{bib26,
	author = {Sab{\` o}, A and Amati, B},
	journal = {Cold Spring Harbor Perspectives in Medicine},
	year = {2014},
	title = {Genome recognition by {MYC}},
	volume = {4},
}

@article{bib27,
	author = {Sab{\` o}, A and Kress, TR and Pelizzola, M and de Pretis, S and Gorski, MM and Tesi, A and Morelli, MJ and Bora, P and Doni, M and Verrecchia, A and Tonelli, C and Fag{\` a}, G and Bianchi, V and Ronchi, A and Low, D and M{\" u}ller, H and Guccione, E and Campaner, S and Amati, B},
	journal = {Nature},
	year = {2014},
	pages = {488--492},
	title = {Selective transcriptional regulation by {Myc} in cellular growth control and lymphomagenesis},
	volume = {511},
}

@article{bib28,
	author = {Schlosser, I and H{\" o}lzel, M and Hoffmann, R and Burtscher, H and Kohlhuber, F and Schuhmacher, M and Chapman, R and Weidle, UH and Eick, D},
	journal = {Oncogene},
	year = {2005},
	pages = {520--524},
	title = {Dissection of transcriptional programmes in response to serum and c-{Myc} in a human {B}-cell line},
	volume = {24},
}

@article{bib29,
	author = {Schneider, CA and Rasband, WS and Eliceiri, KW},
	journal = {Nature Methods},
	year = {2012},
	pages = {671--675},
	title = {NIH {Image} to {ImageJ}: 25 years of image analysis},
	volume = {9},
}

@article{bib30,
	author = {Schuhmacher, M and Staege, MS and Pajic, A and Polack, A and Weidle, UH and Bornkamm, GW and Eick, D and Kohlhuber, F},
	journal = {Current Biology},
	year = {1999},
	pages = {1255--1258},
	title = {Control of cell growth by c-{Myc} in the absence of cell division},
	volume = {9},
}

@article{bib31,
	author = {Silberzahn, R and Uhlmann, EL and Martin, DP and Anselmi, P and Aust, F and Awtrey, EC and Bahn{\' i}k, {\v S} and Bai, F and Bannard, C and Bonnier, E and Carlsson, R and Cheung, F and Christensen, G and Clay, R and Craig, MA and Dalla Rosa, A and Dam, L and Evans, MH and Cervantes, F and Fong, N and Gamez-Djokic, M and Glenz, A and Gordon-McKeon, S and Heaton, T and Eriksson, KH and Heene, M and Hofelich Mohr, A and H{\" o}gden, F and Hui, K and Johannesson, M and Kalodimos, J and Kaszubowski, E and Kennedy, DM and Lei, R and Lindsay, TA and Liverani, S and Madan, CR and Molden, DC and Molleman, E and Morey, RD and Mulder, LB and Nijstad, BA and Pope, B and Pope, NG and Prenoveau, JM and Rink, F and Robusto, E and Roderique, H and Sandberg, A and Schlueter, E and Sch{\" o}nbrodt, FD and Sherman, MF and Sommer, SA and Sotak, KL and Spain, SM and Sp{\" o}rlein, C and Stafford, T and Stefanutti, L and T{\" a}uber, S and Ullrich, J and Vianello, M and Wagenmakers, E-J and Witkowiak, M and Yoon, S and Nosek, BA},
	journal = {PsyArXiv},
	year = {2017},
	title = {Many analysts, one dataset: Making transparent how variations in analytical choices affect results},
	howpublished = {https://psyarxiv.com/qkwst/},
}

@article{bib32,
	author = {Trakhtenberg, EF and Pho, N and Holton, KM and Chittenden, TW and Goldberg, JL and Dong, L},
	journal = {Scientific Reports},
	year = {2016},
	pages = {32249},
	title = {Cell types differ in global coordination of splicing and proportion of highly expressed genes},
	volume = {6},
}

@article{bib33,
	author = {Valentine, JC and Biglan, A and Boruch, RF and Castro, FG and Collins, LM and Flay, BR and Kellam, S and Mo{\' s}cicki, EK and Schinke, SP},
	journal = {Prevention Science},
	year = {2011},
	pages = {103--117},
	title = {Replication in prevention science},
	volume = {12},
}

@article{bib34,
	author = {Viechtbauer, W},
	journal = {Journal of Statistical Software},
	year = {2010},
	pages = {1--48},
	title = {Conducting {Meta}-{Analyses} in {R} with the metafor {Package}},
	volume = {36},
}

@article{bib35,
	author = {Walz, S and Lorenzin, F and Morton, J and Wiese, KE and von Eyss, B and Herold, S and Rycak, L and Dumay-Odelot, H and Karim, S and Bartkuhn, M and Roels, F and W{\" u}stefeld, T and Fischer, M and Teichmann, M and Zender, L and Wei, CL and Sansom, O and Wolf, E and Eilers, M},
	journal = {Nature},
	year = {2014},
	pages = {483--487},
	title = {Activation and repression by oncogenic {MYC} shape tumour-specific gene expression profiles},
	volume = {511},
}