As part of the Reproducibility Project: Cancer Biology, we published a Registered Report (Blum et al., 2015), that described how we intended to replicate selected experiments from the paper ‘Transcriptional amplification in tumor cells with elevated c-Myc’ (Lin et al., 2012). Here we report the results. We found overexpression …
This is an example project demonstrating various features and functionalities for authoring reproducible articles in R Markdown. To contribute improvements please submit PRs to https://github.com/stencila/examples/tree/master/rmarkdown.
Example project based on https://hub.stenci.la/elife/article-52258/ for demonstrating how to enrich an existing published research article.
A demonstration project based on Matteo Mancini et al's paper. It features a Jupyter Notebook pulled from https://github.com/matteomancini/myelin-meta-analysis with extensive interactive Plotly visualizations created using both R and Python. This project is mainly a test for a forthcoming Executable Research Article to be publi…
A key step in the cellular adaptive immune response is the presentation of antigen to T cells. During this process short peptides processed from self or foreign proteins may be presented on the surface bound to MHC molecules for binding to T cell receptors. Those that bind and activate an immune response are called epitopes. Co…
This is a demo article presented on the Stencila homepage to demonstrate the capabilities of Executable Research Articles.
